- H.C. Ng, I. Coleman, S. Liu and W. Luk,
Reconfigurable acceleration of short read mapping with biological consideration,
ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, 2021.
- I. Coleman, G. Corleone, J. Arram, H.C. Ng, L. Magnani and W. Luk,
GeDi: applying suffix arrays to increase the repertoire of detectable SNVs in tumour genomes,
BMC Bioinformatics, 21(1):45, 2020.
- H.C. Ng, S. Liu, I. Coleman, R.S.W. Chu, M.C. Ye and W. Luk,
Acceleration of short read alignment with runtime reconfiguration,
International Conference on Field-Programmable Technology, 2020.
- J. Arram, T. Kaplan, W. Luk and P. Jiang,
Leveraging FPGAs for accelerating short read alignment,
IEEE/ACM Transactions on Computational Biology and Bioinformatics,
vol. 14, no. 3, May/June 2017.
- J. Arram, M. Pflanzer, T. Kaplan and W. Luk,
FPGA acceleration of reference-based compression for genomic data,
International Conference on Field-Programmable Technology, 2015.
- J. Arram, W. Luk and P. Jiang,
Ramethy: Reconfigurable acceleration of Bisulfite sequence alignment,
ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, 2015.
- J. Arram, K.H. Tsoi, W. Luk and P. Jiang,
Reconfigurable acceleration of short read mapping,
IEEE International Symposium on Field-Programmable Custom Computing Machines, 2013.
- J. Arram, K.H. Tsoi, W. Luk and P. Jiang,
Reconfigurable filtered acceleration of short read alignment,
International Conference on Field-Programmable Technology, 2013.
- J. Arram, K.H. Tsoi, W. Luk and P. Jiang,
Hardware acceleration of genetic sequence alignment,
International Symposium on Applied Reconfigurable Computing, 2013.
- D.B. Thomas, W. Luk and M. Stumpf,
Reconfigurable hardware acceleration of canonical graph labelling,
International Symposium on Applied Reconfigurable Computing, 2007.
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